Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing
STRUCTURE, Vol. 29, No. 12, Aralık 2021, s. 1382, ISSN: 0969-2126
DURDAĞI SERDAR, DOĞAN BERNA, DEMİRCİ HASAN
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Synthesis, molecular docking and molecular dynamics studies of novel tacrine-carbamate derivatives as potent cholinesterase inhibitors
BIOORGANIC CHEMISTRY, Vol. 115, Ekim 2021, ISSN: 0045-2068
ÖZTEN ÖZGE, ZENGİN KURT BELMA, SÖNMEZ FATİH, DOĞAN BERNA, DURDAĞI SERDAR
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Integrating Ligand and Target-Driven Based Virtual Screening Approaches With in vitro Human Cell Line Models and Time-Resolved Fluorescence Resonance Energy Transfer Assay to Identify Novel Hit Compounds Against BCL-2
FRONTIERS IN CHEMISTRY, Vol. 8, Nisan 2020, ISSN: 2296-2646
TUTUMLU GURBET,DOĞAN BERNA,AVSAR TİMUCİN,ORHAN MUGE DİDEM,CALİS SEYMA,DURDAGİ SERDAR
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Contact angle of montmorillonite basal surface as determined by experimental and molecular dynamics simulation
Balkan Mineral Processing Congress, 31 Ekim 2017
KARATAŞ DENİZ,HOJİYEV RUSTAM,ÇELİK MEHMET SABRİ
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Interaction of curcumin in a drug delivery system including a composite with poly(lactic-co-glycolic acid) and montmorillonite: a density functional theory and molecular dynamics study
J. Mater. Chem. B, Vol. 5, No. 40, Ocak 2017, s. 8070-8082, ISSN: 2050-750X
KARATAŞ DENİZ,TEKİN ADEM,BAHADORİ FATEMAH,ÇELİK MEHMET SABRİ
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The anisotropic characteristics of natural fibrous sepiolite as revealed by contact angle surface free energy AFM and molecular dynamics simulation
Colloids and Surfaces A: Physicochemical and Engineering Aspects, Vol. 408, No. 408, Ağustos 2012, s. 22-31, ISSN: 09277757
BENLİ BİRGÜL,DU HAO,ÇELİK MEHMET SABRİ
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Optimization of seed-induced lateral liquid beam epitaxy growth of germanium on insulator by molecular dynamics
Collaborative Conference on 3D and Materials Research (CC3DMR-2015), 15 Haziran 2015
NAYİR NADİRE, TAŞCI EMRE, ÖZYURT İREM, YERCİ SELÇUK, ERKOÇ ŞAKİR
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Theoretical Investigation of W(CO)6 and CO Selenization Process
Sakarya University Journal of Science, Vol. 26, No. 2, Nisan 2022, s. 283-291, ISSN: 1301-4048
NAYİR NADİRE
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Atomic-scale probing of defect-assisted Ga intercalation through graphene using ReaxFF Molecular Dynamics Simulations
Carbon, Nisan 2022, ISSN: 0008-6223
NAYİR NADİRE, SENGUL MERT, COSTİNE ANNA, REİNKE PETRA, RAJABPOUR SİAVASH, BANSAL ANUSHKA, KOZHAKHMETOV AZİMKHAN, ROBİNSON JOSHUA, REDWİNG JOAN, VAN DUİN ADRİ
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Understanding physical chemistry of Ba<sub><i>x<\/i><\/sub>Sr<sub>1−<i>x<\/i><\/sub>TiO<sub>3<\/sub> using ReaxFF molecular dynamics simulations
Physical Chemistry Chemical Physics, Vol. 23, Ekim 2021, ISSN: 1463-9076
AKBARİAN DOOMAN, NAYİR NADİRE, VAN DUİN ADRİ
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Oxidation and hydrogenation of monolayer MoS2 with compositing agent under environmental exposure: The ReaxFF Mo/Ti/Au/O/S/H force field development and applications
Frontiers Media SA, Vol. 4, Ekim 2022, ISSN: 2673-3013
MAO QİAN, ZHANG YUWEİ, NAYİR NADİRE, KOWALİK MALGORZATA, VAN DUİN ADRİ, CHANDROSS MİCHAEL
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Structural and Thermal Properties of Indium Phosphide Nanoparticles Molecular Dynamics Simulations
Journal of Computational and Theoretical Nanoscience, Vol. 12, No. 9, Eylül 2015, s. 2134-2139, ISSN: 15461955
NAYİR NADİRE,TAŞCI EMRE,ŞAKİR ERKOÇ
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Adsorption of dihalogen molecules on pristine graphene surface: Monte Carlo and molecular dynamics simulation studies
Journal of Molecular Modeling, Vol. 23, Ocak 2017, ISSN: 1610-2940","0948-5023
SÜTAY BERKAY, YURTSEVER MİNE
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The Investigation of Adsorption Processes of Dihalogen Molecules onto Pristine Graphene Surface via Molecular Dynamics and Monte Carlo Simulations
2nd Graphene and Related Technologies: from Laboratory to Industry" symposium, 15 Ekim 2015
SÜTAY BERKAY,YURTSEVER MİNE
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Phylogenetic, structural, and functional characterization of AMT31, an ammonium transporter induced by mycorrhization among model grasses
MYCORRHIZA, Vol. 27, No. 7, Ocak 2017, s. 695-708, ISSN: 0940-6360
KOEGEL SALLY,MİEULET DELPHİNE,BADAY SEFER,CHATAGNİER ODİLE,LEHMANN MORİTZ F.,WİEMKEN ANDRES,BOLLER THOMAS,WİPF DANİEL,BERNECHE SİMON,GUİDERDONİ EMMANUEL,COURTY PİERRE-EMMANUEL
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Hierarchical Self-Assembly of Histidine-Functionalized Peptide Amphiphiles into Supramolecular Chiral Nanostructures
LANGMUIR, Vol. 33, No. 32, Ocak 2017, s. 7947-7956, ISSN: 0743-7463
KOC MERYEM HATİP,CİFTCİ GOKSU CİNAR,BADAY SEFER,CASTELLETTO VALERİA,HAMLEY IAN W.,GULER MUSTAFA O.
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Supramolecular Peptide Nanofiber Morphology Affects Mechanotransduction of Stem Cells
BIOMACROMOLECULES, Vol. 18, No. 10, Ocak 2017, s. 3114-3130, ISSN: 1525-7797
ARSLAN ELİF,KOC MERYEM HATİP,UYSAL OZGE,DİKECOGLU BEGUM,TOPAL AHMET E.,GARİFULLİN RUSLAN,OZKAN ALPER D.,DANA AYKUTLU,HERMİDA-MERİNO DANİEL,CASTELLETTO VALERİA,EDWARDS-GAYLE CHARLOTTE,BADAY SEFER,HAMLEY IAN,GULER MUSTAFA O.,TEKİNAY AYSE B.
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Molecular Dynamics of Vibration Effects for Ar Ni 100 Collision System
International Workshop on New Trends in Science and Technology, 3 Kasım 2008
HUNDUR YAKUP, GÜVENÇ Z B, HİPPLER R
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Production of CNTs from Graphite by Thermal Processes A Numerical Analysis
MOLEC 2010, European Conference on Dynamics of Molecular Systems, 5 Eylül 2010
HUNDUR YAKUP, WARRİER M, SCHNEİDER R
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Mechanical properties of fullerene embedded silicon nanowires
ARCHIVE OF APPLIED MECHANICS, Vol. 93, Nisan 2023, s. 355-367, ISSN: 0939-1533
ERBAŞ BERKE, YARDIM SARVEN, KIRCA MESUT
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